New tools for peering into cell function.

New tools for peering into cell function


Sep 9, 2024
Above: Ming Hammond, professor of chemistry. PHOTO CREDIT: Dave Titensor, University of Utah

U chemists discover how key contrast agent works, paving the way to create markers needed for correlative microscopy.

Two labs at the University of Utah’s Department of Chemistry joined forces to improve imaging tools that may soon enable scientists to better observe signaling in functioning cells and other molecular-scale processes central to life.

Rodrigo Noriega, assistant professor of chemistry and co-author of the study.

The Noriega and Hammond labs, with complementary expertise in materials chemistry and chemical biology, made critical discoveries announced this month in the Journal of the American Chemical Society that could advance this goal. Their joint project was kickstarted through a team development grant from the U College of Science and the 3i Initiative to encourage faculty with different research interests to work together on big-picture problems.

“We’re trying to develop a new kind of imaging method, a way to look into cells and be able to see both their structural features, which are really intricate, while also capturing information about their activity,” said co-author Ming Hammond, a professor of chemistry. "Current methods provide high-resolution details on cellular structure but have a challenging ‘blind spot’ when it comes to function. In this paper, we study a tool that might be applied in electron microscopy to report on structure and function at the same time.”

Biological samples often need “markers,” or molecules that are the source of detectable signals, explained co-author Rodrigo Noriega, an assistant professor of chemistry. A widely used type of markers are flavoproteins which, when photoexcited, trigger a chemical reaction that yields metal-absorbing polymer particles whose high contrast in electron microscopy is easily seen.

Scientists had long assumed that a mechanism involving singlet oxygen generation, a special kind of reactive oxygen species, was at play. However, the U team found that electron transfer between the photoexcited marker and the polymer building blocks is the main contributor to the process.

You can read the full story by Brian Maffly in @TheU.

 

Is the Past the Key to Our Future Climate?

Is the Past the Key to Our Future Climate?


September 3, 2024
Above: forams under microscopic level

New research from U geologists links rapid climate change 50 million years ago to rising CO2 levels.

At the end of the Paleocene and beginning of the Eocene epochs, between 59 to 51 million years ago, Earth experienced dramatic warming periods, both gradual periods stretching millions of years and sudden warming events known as hyperthermals. Driving this planetary heat-up were massive emissions of carbon dioxide (CO2) and other greenhouse gases, but other factors like tectonic activity may have also been at play.

Gabriel Bowen

New research led by University of Utah geoscientists pairs sea surface temperatures with levels of atmospheric COduring this period, showing the two were closely linked. The findings also provide case studies to test carbon cycle feedback mechanisms and sensitivities critical for predicting anthropogenic climate change as we continue pouring greenhouse gases into the atmosphere on an unprecedented scale in the planet’s history.

“The main reason we are interested in these global carbon release events is because they can provide analogs for future change,” said lead author Dustin Harper, a postdoctoral researcher in the Department of Geology & Geophysics. “We really don’t have a perfect analog event with the exact same background conditions and rate of carbon release.”

But the study published on 26th August'24 in the Proceedings of the National Academy of Sciences, or PNAS, suggests emissions during two ancient “thermal maxima” are similar enough to today’s anthropogenic climate change to help scientists forecast its consequences. The research team analyzed microscopic fossils—recovered in drilling cores taken from an undersea plateau in the Pacific—to characterize surface ocean chemistry at the time the shelled creatures were alive. The findings indicate that as atmospheric levels of COrose, so too did global temperatures.

“We have multiple ways that our planet, that our atmosphere is being influenced by CO2 additions, but in each case, regardless of the source of CO2, we’re seeing similar impacts on the climate system,” said co-author Gabriel Bowen, a U professor of geology & geophysics.

Read the full article by Brian Maffly @TheU.

Elevating Public Understanding of Geoscience

Elevating Public Understanding of Geoscience


August 26, 2024. Above: Marjorie Chan

Marjorie Chan, Distinguished Professor Emerita at the Department of Geology and Geophysics at the University of Utah, is the 2024 recipient of the Outstanding Contribution to the Public Understanding of the Geosciences award.

The award is presented by the American Geosciences Institute (AGI) to a person, organization, or institution in recognition of an outstanding contribution to the public understanding of geoscience. "Dr. Chan has demonstrated extraordinary commitment to public outreach and community service throughout her career," according to the press release issued by AGI. "Her earliest efforts focused on inspiring and supporting young women in the geosciences, and over the decades her concerns expanded to promoting public awareness of environmental issues and the urgent need to conserve geological resources."

Chan has given hundreds of public lectures, served as a volunteer consultant on scores of ecological and preservation projects as well as art collaborations, advised and created instructive material for secondary teachers and oversaw major Earth science community initiatives. The U has Chan to thank for coordinating the design and construction of the first LEED-certified building on the academic campus which includes educational visual displays that have since inspired geoscience building designs across the nation.

A PASSION FOR EARTH SCIENCE

Lobby of the Sutton Building, University of Utah

"I am very honored to be recognized by AGI for a career that has been so engaging and fulfilling,” says Chan who served as department chair during which time she was appointed the U’s first Geology and Geophysics faculty coordinator of outreach. “Being a part of the Earth science community has been an experience beyond my expectations. I’ve learned from so many wonderful people and made connections across cultures and countries that I will never forget. This has inspired me to share my passion for Earth science with the public. “

That passion for sharing has led to Chan's being featured in documentaries including National Geographic and Discovery Channel television shows. Additionally, she has been a guest on National Public Radio’s Science Friday, and has served as a science advisor for PBS-Nova Science Now. Her NASA science and outreach activities include Endeavor 2016 Dynamic Mars Webinars for K-12 teachers, Mars for Earthlings webinars and short courses and development of teaching modules for higher education instructors.

As the 2014 Geological Society of America (GSA) Distinguished International Lecturer Chan has given 53 lectures spanning India, New Zealand, Australia, China, Japan, and South Korea. In addition to receiving two national meeting presentation awards from SEPM (Society for Sedimentary Geology), she is the winner of the GSA Distinguished Service Award (2020) and the GSA Sloss Award for Lifetime Achievements in Sedimentary Geology (2019). She was also elected GSA Fellow in 1995. In her national committee work she has chaired the GSA Diversity Committee (2012-2013), the GSA Sedimentary Geology Division (2014-2015) and the U.S. National Committee for Geological Sciences (2022-2023).

Referring to the recent honor, Chan says “the award recognizes the impact of many important mentors and colleagues, and their investment in me. Being honored by AGI is an affirmation of the value in giving back to a profession that has brought me so much enrichment in my life.”

The Frederick Albert Sutton Building, the first LEED-certified building on U academic campus.

From Precambrian to Pleistocene

Chan earned a PhD in Geology from the University of Wisconsin-Madison in 1982 and a BS in Geology from the University of California-Davis in 1977. During an academic career of more than 40 years at the U, she has authored or co-authored more than 150 peer-reviewed articles on a range of sedimentary topics. Her work has spanned the Precambrian up to the Pleistocene with recent research that applied terrestrial examples to better understand Martian geology.

When it comes to outreach Chan knows that public engagement is often an afterthought or less valued than research and teaching. “I feel that spreading our knowledge more widely is a core principle of scholarship. Our societal future relies on public understanding of the complexities in the natural world.”

Chan, who retired this year, is being recognized for the award at the Friends of AGI Awards Reception during the GSA Connects conference in Anaheim, California, on September 24, 2024.

 

by David Pace

About The American Geosciences Institute, AGI is a federation of scientific and professional organizations representing over a quarter-million geoscientists, is a nonprofit 501(c)(3) organization dedicated to serving the geoscience community and addressing the needs of society. AGI headquarters are in Alexandria, Virginia.

Scientists Find Hope in Cone Snail Venom

Scientists Find Hope in Cone Snail Venom


Aug 23, 2024
Above : Ho Yan Yeung, PhD (left) and Thomas Koch, PhD (right, also an author on the study) examine a freshly-collected batch of cone snails. Image credit: Safavi Lab.

Based on work by Toto Olivera, the father of research on cone snail venom, scientists are now finding clues for how to treat diabetes and hormone disorders in a toxin from one of the most venomous animals on the planet.

An international research team led by University of Utah scientists has identified a component within the venom of a predatory marine cone snail, the geography cone, that mimics a human hormone called somatostatin, which regulates the levels of blood sugar and various hormones in the body. The hormone-like toxin’s specific, long-lasting effects, which help the snail hunt its prey, could also help scientists design better drugs for people with diabetes or hormone disorders, conditions that can be serious and sometimes fatal.

The results were published Aug. 20 in the journal Nature Communications.

A blueprint for better drugs

Somatostatin acts like a brake pedal for many processes in the human body, preventing the levels of blood sugar, various hormones, and many other important molecules from rising dangerously high. The cone snail toxin, called consomatin, works similarly, the researchers found—but consomatin is more stable and specific than the human hormone, which makes it a promising blueprint for drug design.

By measuring how consomatin interacts with somatostatin’s targets in human cells in a dish, the researchers found that consomatin interacts with one of the same proteins that somatostatin does. But while somatostatin directly interacts with several proteins, consomatin only interacts with one. This fine-tuned targeting means that the cone snail toxin affects hormone levels and blood sugar levels but not the levels of many other molecules.

In fact, the cone snail toxin is more precisely targeted than the most specific synthetic drugs designed to regulate hormone levels, such as drugs that regulate growth hormone. Such drugs are an important therapy for people whose bodies overproduce growth hormones. Consomatin’s effects on blood sugar could make it dangerous to use as a therapeutic, but by studying its structure, researchers could start to design drugs for endocrine disorders that have fewer side effects.

Consomatin is more specific than top-of-the-line synthetic drugs—and it also lasts far longer in the body than the human hormone, thanks to the inclusion of an unusual amino acid that makes it difficult to break down. This is a useful feature for pharmaceutical researchers looking for ways to make drugs that will have long-lasting benefits.

Learning from cone snails

Finding better drugs by studying deadly venoms may seem unintuitive, but Helena Safavi, associate professor of biochemistry in the U’s Spencer Fox Eccles School of Medicine and the senior author on the study, explained that the toxins’ lethality is often aided by pinpoint targeting of specific molecules in the victim’s body. That same precision can be extraordinarily useful when treating disease.

“Venomous animals have, through evolution, fine-tuned venom components to hit a particular target in the prey and disrupt it,” Safavi said. “If you take one individual component out of the venom mixture and look at how it disrupts normal physiology, that pathway is often really relevant in disease.” For medicinal chemists, “it’s a bit of a shortcut.”

Among Safavi’s coauthors are faculty from the U’s School of Biological Sciences, including Baldomero Olivera and Samuel Espino. The U has been a hotspot for research into the venom’s pharmacological properties since Olivera arrived in Utah in 1970 from his native Philippines, bringing his interest in cone snails with him.

Read the full, original story by Sophia Friesen in UofU Health.
Read about Toto Olivera’s 2022 Golden Goose Award for early research in cone snails here.

Deep Beneath Our Feet: A Seismic Surprise

Deep Beneath Our Feet: A Seismic Surprise


Aug 20, 2024
Above: Earth’s interior. Credit: Michael Thorne

For the decades since their discovery, seismic signals known as PKP precursors have challenged scientists. Regions of Earth’s lower mantle scatter incoming seismic waves, which return to the surface as PKP waves at differing speeds.

The origin of the precursor signals, which arrive ahead of the main seismic waves that travel through Earth’s core, has remained unclear, but research led by University of Utah geophysicists sheds new light on this mysterious seismic energy.

PKP precursors appear to propagate from places deep below North America and the western Pacific and possibly bear an association with “ultra-low velocity zones,” thin layers in the mantle where seismic waves significantly slow down, according to research published in AGU Advances, the American Geophysical Union’s lead journal. (The AGU highlighted the research in its magazine Eos.)

“These are some of the most extreme features discovered on the planet. We legitimately do not know what they are,” said lead author Michael Thorne, a U associate professor of geology and geophysics. “But one thing we know is they seem to end up accumulating underneath hotspot volcanoes. They seem like they may be the root of whole mantle plumes giving rise to hotspot volcanoes.”

These plumes are responsible for the volcanism observed at Yellowstone, the Hawaiian Islands, Samoa, Iceland and the Galapagos Islands.

Thorne’s team, which included research assistant professor Surya Pachhai, devised a way to model waveforms to detect crucial effects that previously went unnoticed. Using a cutting-edge seismic array method and new theoretical observations from earthquake simulations, the researchers developed, they analyzed data from 58 earthquakes that occurred around New Guinea and were recorded in North America after passing through the planet.

Their new method allowed them to pinpoint where the scattering occurred along the boundary between the liquid metal outer core and the mantle, known as the core-mantle boundary, located 2,900 kilometers below Earth’s surface.

Read the full article by Brian Maffly @TheU.

Urban ‘Cool Zones’

Urban 'Cool Zones'


August 14, 2024
Above: A poster created by Salt Lake County to promote cool zones. Credit: KSLNewsRadio

Daniel Mendoza brings science (and change) to the people.

Daniel Mendoza

A research associate professor in the Department of Atmospheric Sciences at the University of Utah, Daniel Mendoza is not your typical academic scientist. With an impressive list of publications, averaging a new paper each month, academic scholarship is only one of his accomplishments. Mendoza has become an environmental social justice advocate, leveraging his research to get the attention of politicians and legislatures. The intersection between what’s happening in the atmosphere and what’s happening on the ground in people’s lives is where Mendoza readily enters.

This summer, Salt Lake has fallen victim to heat waves that mirror those throughout the United States. According to the CDC, extreme heat kills around a thousand people in the U.S. each year, more than any other natural-occurring factor. Effects from the heat are easily felt, but more insidious are the effects from increased concentrations of air pollutants, namely ozone. 

Mendoza explains in an interview with @theU’s Lisa Potter that “ozone is dangerous because it basically causes a sunburn in your lungs that impacts respiratory and cardiovascular health.”

In a recent study, Mendoza and his team asked the question, “can cool zones protect individuals from heat and poor air quality?” “Cool zones” are public buildings that serve as environmental refuges for vulnerable people during periods of extreme heat. Places like recreation centers or libraries are good examples of cool zones; Mendoza chose the Millcreek Library as the location for his case study. 

Obviously cool zones protect individuals from heat with the use of air conditioning, but the study found that the Millcreek Library also reduced exposure to atmospheric ozone by around 80%. 

Given their demonstrated efficacy, Mendoza is now critical of the current scope of cool zones. “We should be thinking about how to make these centers more accessible, for example, keeping them open for longer hours to protect people during the hottest parts of the day.” Many heat refuges close around 2-3 p.m. and aren’t open on weekends.

What people believe

Daniel Mendoza in the 2021 documentary "AWAiRE" that explores the impacts of air quality along the Wasatch Front. Credit: AWAIRE.

Mendoza understands that data alone is not convincing enough to enact change outside of the scientific community. “About 50% of people in the U.S. believe in climate change, but 100% believe in lung cancer, which is why I wanted to pivot from more climate drivers and greenhouse gas emissions and products towards more health criteria,” he says. Furthermore, he continues, “...150% of people believe in the dollar. I mean that’s ultimately what drives policy, what drives a lot of decision making.” 

It was during his Pulmonary and Critical Care Medicine Fellowship program at the U when Mendoza learned more about how to tie in the social and basic sciences with the health sciences. He finished the program in 2020 after completing a capstone project looking at the impact of air pollution on school absences. 

On “orange” or “red” air quality index (AQI) days, students are often still sent outside for recess, resulting in many children experiencing respiratory symptoms and needing to be sent home. Missing school every so often because the air quality is poor doesn’t sound like a huge issue, but it adds up to impact the student as well as the school, its district and the city where they live, he explains.

“When you have repeat absenteeism, then the potential to graduate is much lower, the potential to go to college is much lower, then your tax base is lower,” says Mendoza. Increased school absences cost the city around half a million dollars a year in terms of reduced workforce, education costs and healthcare costs. 

The solution to this pervasive issue of children being sent home because of the deleterious effects of bad air was surprisingly simple: emergency asthma inhalers in every classroom, right next to the Epinephrine Auto-Injectors branded “EpiPens” Says Mendoza, “I worked with Representative Mark Wheatley,” chair for the Utah Asthma Task Force, “and we passed a law…. Utah became the 14 (or 15th) state that has emergency asthma inhalers in every single school.” 

Now on bad air days, instead of sending a student home, students can use the rescue inhaler and remain at school, placing less of an economic burden on the city and giving themselves more time to learn. It’s a health-issue solution based on atmospheric data that changes policy and in turn saves taxpayer dollars. 

Empowering the Community 

Mendoza soon discovered what others had already discovered or at least suspected, that certain populations in the city were more endangered than others. What distinguished those populations was lower-income brackets and racial and ethnic inequities. When he first moved to Salt Lake City, Mendoza was excited about the buzz around air quality. “I thought, this is great. My research is going to be welcomed by the community,” he recalls. Instead, he discovered that these events were forgetting a key part of the problem: the people who are most impacted. 

Mendoza started attending community-based informational gatherings about climate change and the environment. “All of these events are held east of State Street. They were all in English. No one looked like me. Then at the end of the talk, the conclusion was ‘buy electric vehicles and solar panels and we’ll save the world together.’ Well that doesn’t work for everyone.” 

Not only is there a disparity in the communities affected by poor air quality, there is an inequality in accessible solutions to the problem. “For most of them, air quality is not a top priority… they don’t have the luxury of learning like we do,” says Mendoza of those who are most likely to be impacted by bad air quality. 

The first step in empowering the community and addressing this imbalance was to bring science to them. Mendoza began organizing outreach events, this time on the west side of State Street, held in both Spanish and English. 

“We provide them with actionable solutions. For example, we partnered with Utah Clean Energy, and we did an LED exchange where people bought in their normal light bulbs,” he says. Another switch he facilitated was to low-flow showerheads. 

And yet another initiative included furnace filter exchange with 100 homes in Salt Lake County. When indoor air was tested for 43 different potential problematic elements, researchers found elevated levels of uranium, lanthanides, arsenic and lead, “all the nasties.” 

Those “nasties” come from a variety of sources. “If you’re close to a highway, for example, you [breathe in] more of aluminum, associated with brake wear,” says Mendoza of the indoor air quality study, the first study of its kind. “When was the last time you sat outside for eight hours? You spend 90% of your time indoors and 60% of your time in your home, roughly speaking.” 

“The people that we really are very concerned about are, for example, the delivery drivers, who are constantly in that traffic, road construction workers as well. Those people are breathing [in] literally every single car’s tailpipe.” 

‘Run back inside’

Inequities in who breathes bad air requires that one looks closely at why and how bad air gets ingested. “Those with more and better resources can think about these issues involving bad air and what used to be only seasonal atmospheric inversions along the Wasatch Front, and then “just run back inside and we’re fine. But very few studies have been done on these concentrated pollution sources, again in conjunction with what they may be exposed to ‘naturally.’” 

From the 2021 documentary "AWAiRE." Credit: AWAIRE.

Those studies are being done by Mendoza and others and then made actionable on-the- ground initiatives involving switching out devices that are less effective and cost more money in populations who are most threatened by breathing bad air. 

These simple switches in affordable fixtures, for example, have tangible and meaningful impacts that inspire other actions, other policy decisions leading to better health outcomes. 

“Participants in these gatherings  soon became community leaders to help others improve their situation,” says Mendoza, another favorable result to his work. And then there is the financial incentive, that tongue-in-cheek statistic that 150% of people do in fact “believe in the dollar.” 

“These community members, they have to earn income to survive,” he reminds us. “They see their electric bills go down, they see their heating bills go down, they see their water bills go down, and they realize ‘Oh,okay, so it works. Let me tell all my friends about it.’”

Costs of inaction

Policy-makers and the public in general often look at the costs of solutions to problems that require action but sometimes they forget about the costs of inaction

Regardless of whether the focus of a study is cool zones, compounding wildfire emissions, or, most recently a recent study on the eBus project, a main tool for fine scale carbon emissions measurements in urban environements, Mendoza approaches each new inquiry with the same goal: “I want to make sure that my science gets understood by the general public. I want to write in as plain English as possible, because ultimately, I want to enact change, I want my work to do change.” 

Mendoza challenges the stereotypical ideal of a mad scientist locked away in a lab and detached from reality. Instead, he is present on campus, in the community, and at the state capitol building using science to advocate for justice.

Daniel Mendoza holds joint positions as research associate professor in atmospheric sciences; adjunct associate professor in internal medicine; and adjunct associate professor in City & Metropolitan Planning at the University of Utah.

by Lauren Wigod 

Read more on the 2021 documentary "AWAiRE," featuring Daniel Mendoza in @TheU

 

Don’t Let This Blow You Away: Yellowstone’s Steam Threat

Don't Let This Blow You Away: Yellowstone's Steam Threat


July 29, 2024
Above: Yellowstone National Park officials survey damage near Biscuit Basin from a hydrothermal explosion that occurred Tuesday morning, July 23. Photo courtesy NPS/Jacob W. Frank

A hydrothermal explosion on July 23 at Yellowstone National Park sent visitors running for cover as steam shot into the air and rocks rained down on a popular viewing area.

The blast occurred about 10 a.m. local time near the Black Diamond Pool in Biscuit Basin, about two miles northwest of Old Faithful. No injuries were reported.

“Steam explosions like Tuesday’s incident have long been considered one of the most significant hazards posed to Yellowstone visitors,” says Tony Lowry, associate professor in Utah State University’s Department of Geosciences. “Biscuit Basin has had smaller, but still dangerous, events in the recent past.”

USU alum Jamie Farrell, research associate professor in the University of Utah’s Department of Geology and Geophysics and chief seismologist of the U.S. Geological Survey’s Yellowstone Volcano Observatory, says it was “very lucky” no one was hurt in today’s blast.

“Hydrothermal explosions happen quite frequently in the park, though they often occur in the uninhabited back country," says Farrell, who earned a bachelor’s degree in geology from Utah State in 2001. Farrell says the blasts aren’t volcanic eruptions and no magma is involved.“These incidents occur when very hot, mineral-laden water builds up and clogs the plumbing, so to speak; pressure builds up and is forced upward through pre-existing fractures to erupt at the surface,” he says.

Read the full article by Mary-Ann Muffoletto, Utah State University. 

Solving the Puzzle of Utah’s Summer Ozone

Solving the Puzzle of Utah's Summer Ozone


July 29, 2024
Above: A view of Salt Lake City shot from NOAA’s research aircraft. Credit: NOAA.

The Salt Lake Valley’s summertime ozone pollution is a complicated puzzle because so many different kinds of emissions contribute to the problem, which in turn is affected by the time of day or year, the weather and many other factors.

Without knowing which emissions are most culpable or understanding the role of the region’s topography, solutions to Utah’s ozone mess will remain elusive. In collaboration with University of Utah faculty and funding from the state, the National Oceanic and Atmospheric Administration (NOAA) is helping find answers.

A team of NOAA scientists is in Salt Lake City for the next few weeks gathering masses of air quality data that is expected to yield new insights that could help bring relief. Building on a long record of air quality data compiled by U scientists and the Utah Division of Air Quality (DAQ) over several years, this new snapshot data is hoped to illuminate what is driving elevated ozone levels along the Wasatch Front, according to Steven Brown, one of the NOAA research chemists leading the Utah Summer Ozone Study.

John Lin, professor of atmospheric sciences, on the roof of the Browning building where a phalanx of air quality monitoring instruments are stationed. Photo credit: Brian Maffly.

“Every city in the United States has an ozone problem, but every city is also different in terms of the sources that contribute to that ozone. And Salt Lake is no exception in that regard,” Brown said. “We’re certainly trying to understand the influence of wildfires. But then you’ve got this mix of industrial and urban sources in a valley with very unusual meteorology. We’re trying to characterize all those sources. What does that meteorology look like, and how do those things combine to produce the unique ozone problem that affects Salt Lake City?”

NOAA’s multi-platform study is being coordinated with the U’s Utah Atmospheric Trace Gas & Air Quality (UATAQ)) lab, headed by John Lin, a professor of atmospheric sciences. Also involved is Lin’s colleague Gannet Hallar, whose students are launching weather balloons and providing weather forecast briefings most days of the study to support NOAA’s regular overflights.While Utah has made strides reducing the severity of its particulate pollution-trapping winter inversions, summertime ozone has worsened to the point that Salt Lake City is out of attainment of the federal standard.

The primary ozone precursors are volatile organic compounds, or VOCs, which are emitted from countless sources—including oil refineries, gas stations, wildfire, paints, even personal care products, like deodorant—and nitrogen oxides, or NOx, a product of combustion.

Photons are needed to break up certain molecules, so the reactions typically will not happen without sunlight,” said John Lin, the associate director of the Wilkes Center for Climate Science & Policy. “It essentially chops up those chemical bonds. Then ozone reacts with other things and levels get lower at night.”

Read the full article by Brian Maffly in @TheU.

Satellite measurements of carbon emissions

Monitoring urban Carbon emissions at the global scale


July 30, 2024
Above: A map of the 77 cities at which the urban emissions monitoring framework was applied.

“We’re starting to see a globally consistent system to track [carbon] emission changes take shape,” says atmospheric scientist John Lin.

Faculty in the University of Utah's Department of Atmospheric Sciences, Lin is co-author of a paper in the journal Environmental Research Letters about a new satellite-based system for measuring CO2 emissions in support of global collective climate mitigation actions. As nations and cities continue to state their intentions to decarbonize for the purpose of becoming, in their activities, carbon-neutral, “we want to be able to see it happen from space.” 

Now we have a system to do so. 

That system is the culmination from standing on the shoulders of previous data scientists. It’s a story about how data is collected, interpreted and expanded through new technologies. It’s also about how this recursive process — now turbocharged with the advent of machine learning and AI — creates a space for potential application, innovation and policy that can change our world for the better, including mitigating carbon emissions that are warming our earth at a startling and deleterious rate.

But before any attempt can be made to save the planet, scientists have to secure a consistent measurement framework to better understand what’s happening as well as where it’s happening and how much.

The Backstory

John Lin

The backstory to this tale first begins in the Pacific Ocean. Tracking carbon emissions dates back decades to a single site in Hawai’i where, on a largely inactive volcano on the Big Island, instruments measured carbon dioxide in the atmosphere. At a high elevation, the site was very good at characterizing broad scale changes in carbon dioxide, globally, a “poster child for climate change because over time,” explains Lin who is also associate director of the Wilkes Center for Climate Science and Policy, “we know that from these Hawai’i  measurements, CO2 has this distinct cycle, seasonally, but then this upward trend due to all of us burning fossil fuels.”

Human-caused carbon emissions are not only leading to CO2 buildup everywhere in the atmosphere but the issue is widespread in public discourse. Whether it’s on the micro level of mitigating one’s personal “carbon footprint” by taking the bus, or on the meta level of international initiatives like the Kyoto Accords or the United Nations-brokered Paris Agreement, the effects of carbon emissions are on everyone’s mind. A cascade of cities and whole nations have established goals for mitigating emissions, but their estimates of carbon emissions have been relying on data that are inconsistent and sometimes missing altogether in parts of the world. 

That cities have singly established and even accelerated their carbon-neutral goals is a good thing, considering that over 70 percent of human-emitted CO2 into the atmosphere stems from cities around the globe.

Tracking progress toward city-scale emissions reduction targets is essential by providing “actionable information for policy makers,” the paper states. This while the authors acknowledge that earlier measurements and claims from municipal entities are based on “self-reported emissions inventories,” whose methodology and input data often differ from one another. These practices hamper “understanding of changes in both city-scale emissions and the global summation of urban emissions mitigation actions.”

Orbiting Carbon Observatory

This is where outer space in general comes into play and, in particular, the Orbiting Carbon Observatory (OCO). The NASA mission is designed to make space-based observations of carbon dioxide in Earth’s atmosphere to better understand the characteristics of climate change. After a literal “failure to launch” in 2009, NASA successfully placed a satellite (OCO2) in 2014 with equipment measuring CO2 emissions from space. Satellite-transmitted data promised to be an independent way to calculate, globally, emissions from cities. Not surprisingly, it has taken a while to learn how to use the data. In 2020 a graduate student in Lin’s research group, Dien Wu, developing early methods, did exactly that, looking comprehensively at a total of twenty cities around the world.

Based on essentially the same data set used by Lin and Wilmot in their current paper, but with fewer years, Wu was able to get estimates of the amounts of human emitted CO2 from OCO2 satellite transmissions. Separating out what carbon human activity is emitting to the atmosphere versus those from urban vegetation has now been determined through an expansion of the analyses over the additional years by Lin’s team of researchers, including a later graduate student by the name of Kai Wilmot, co-author of the current study.

In this round, four times as many urban areas as Wu studied and distributed over six continents, have now been assessed. This plant/human conundrum is further complicated by vegetation outside the city which has very different characteristics from vegetation inside the city. The difference creates patterns of CO2  that have to be taken out to distill the human component.

Strangely beautiful animations

Kai Wilmot

In short, Lin and company’s findings, published in Environmental Research Letters, represents a new capacity based on recent developments in modeling. And the animations of the assembled and interpreted satellite CO2 data delivered by the team are startling, even strangely beautiful. In one chart the left side displays latitude vs CO2. “This narrow swath,” explains Lin, indicates “each time … [the satellite] orbits. There's this narrow slice of data that becomes available.”

Using that data, he continues, “the NASA scientists can construct this nice animation of CO2 change in each latitude band over time.” Lin points to what he calls “ridges and valleys” on the the chart that represent the seasonal cycle, and he personifies the entire Earth as if it is “breathing in the carbon dioxide through photosynthesis during the summer growing season and then releasing it in the winter. They have these very sharp ridges — high CO2, low CO2, higher CO2 [the breaths] — but overall, the rug is going up, because we're emitting carbon dioxide into the atmosphere.”

Here, researchers are only looking at a small fraction of data points, the ones that intersect the targeted cities. They then do a more detailed look at whether they’re seeing a signal or not and whether they’re getting enough data.

“Personally,” says Wilmot, “I think the particularly neat aspect of this work is the capacity for global application. Leveraging satellite data and atmospheric modeling, we are able to gain some insight into urban emissions at cities around the world. We can see interactions between these emissions and socioeconomic factors, and we can identify large changes in emissions over time.”

 

The possibilities of creating more rigorous models, and more revealing data about how much cities emit carbon to the atmosphere are tantalizing. And so are the findings of the research. “This kind of information can be used by cities and the UN process,” Lin says. “But I’m pretty sure what they want is something more dynamic through time, how these emissions evolve. And also, probably more frequent updates.” As it was in this study, researchers had to aggregate multiple years of data to get enough points for each city. “So the challenge, I think, is to be able to track more dynamically these emissions over time.”

More to come

NASA’s next iteration of the Orbiting Carbon Observatory — OCO3 — has already been successfully docked on the International Space Station, although it was de-installed for a period of time recently to allow another instrument to carry out measurements. (It turns out that prime real estate on the crowded station is, well, at a premium.) But new data is forthcoming. 

Meantime, researchers have their work cut out for themselves in the data crunching/parsing/interpreting part of this saga. Scientists typically accrue data far faster than they are able to use and interpret them . . . and create cool animations for general consumption.

A log-log plot of the scaling relationship between direct emissions per capita and effective population density for all 77 cities.

“Naturally,” concludes Lin, “to bend the curve in terms of trying to reduce carbon emissions in cities is a primary focus. And there's a lot of excitement and social energy around reducing carbon emissions in cities, including here in Salt Lake. Many mayors have pledged carbon reduction plans, and the University of Utah has their own [pledge]. Lots of cities have very ambitious goals to reduce carbon.”

For Wilmot, this project will only add to the increased “social energy” around the issue of carbon emission mitigation. Satellite measuring will help identify a path toward monitoring urban emissions at the global scale in order to identify effective policy levers for emissions reductions. “Of course, realizing this monitoring ability is contingent on further development of the modeling, satellite observations, and a number of necessary input datasets,” he says. “So by no means am I saying that we are there already.” 

Clearly, this research has shown that the co-authors’ designed, multi-component satellite framework is capable of monitoring CO2 emissions across urban systems and identifying relevant driving factors. Their analysis not only pulled out data of the emissions from individual cities, but, because it is global, they could then do pattern analyses. In fact, the researchers, using an established relationship between emission-per-capita vs population density were able to plot from the data what happened, emissions-wise, during the COVID shutdown.

But, as co-author Kai Wilmot infers about work yet to be done, the ending to this story — from the Hawaiian Islands to outer space — is one of not-quite-yet “mission accomplished.”

“It’s more like mission half-accomplished,” John Lin concedes, “which is often the case in research.”

By David Pace

Read the complete paper in Environmental Research Letters.  

 

Scientists use AI to predict a wildfire’s next move

Scientists use AI to predict
a wildfire's next move


July 29, 2024

University of Utah Atmospheric Scientist Derek Mallia joins seven other researchers at University of Southern California and elsewhere in developing a new method to accurately predict wildfire spread.

By combining satellite imagery and artificial intelligence, their model offers a potential breakthrough in wildfire management and emergency response.

Detailed in an early study proof published in Artificial Intelligence for the Earth Systems, the USC model uses satellite data to track a wildfire's progression in real time, then feeds this information into a sophisticated computer algorithm that can accurately forecast the fire's likely path, intensity and growth rate.

Above : DEREK VINCENT MALLIA, Department of Atmospheric Sciences.

The study comes as California and much of the western United States continues to grapple with an increasingly severe wildfire season. Multiple blazes, fueled by a dangerous combination of wind, drought and extreme heat, are raging across the state. Among them, the Lake Fire, the largest wildfire in the state this year, has already scorched over 38,000 acres in Santa Barbara County.

Reverse-engineering wildfire behavior with AI

The researchers began by gathering historical wildfire data from high-resolution satellite images. By carefully studying the behavior of past wildfires, the researchers were able to track how each fire started, spread and was eventually contained. Their comprehensive analysis revealed patterns influenced by different factors like weather, fuel (for example, trees, brush, etc.) and terrain.

They then trained a generative AI-powered computer model known as a conditional Wasserstein Generative Adversarial Network, or cWGAN, to simulate how these factors influence how wildfires evolve over time. They taught the model to recognize patterns in the satellite images that match up with how wildfires spread in their model.

They then tested the cWGAN model on real wildfires that occurred in California between 2020 and 2022 to see how well it predicted where the fire would spread.

Read the rest of the story in ScienceDaily.