Patterns in Sound

Fernando Guevara Vasquez


U mathematicians create quasiperiodic patterns using sound waves.

Mathematicians and engineers at the University of Utah have teamed up to show how ultrasound waves can organize carbon particles in water into a sort of pattern that never repeats. The results, they say, could result in materials called “quasicrystals” with custom magnetic or electrical properties.

The research is published in Physical Review Letters.

“Quasicrystals are interesting to study because they have properties that crystals do not have,” says Fernando Guevara Vasquez, associate professor of mathematics. “They have been shown to be stiffer than similar periodic or disordered materials. They can also conduct electricity, or scatter waves in ways that are different from crystals.”

Quasiperiodic two-dimensional pattern by Fernando Guevara Vasquez

Non-pattern patterns

Picture a checkerboard. You can take a two-by-two square of two black tiles and two white (or red) tiles and copy and paste to obtain the whole checkerboard. Such “periodic” structures, with patterns that do repeat, naturally occur in crystals. Take, for example, a grain of salt. At the atomic level, it is a grid-like lattice of sodium and chloride atoms. You could copy and paste the lattice from one part of the crystal and find a match in any other part.

But a quasiperiodic structure is deceiving. One example is the pattern called Penrose tiling. At first glance, the geometric diamond-shaped tiles appear to be in a regular pattern. But you can’t copy and paste this pattern. It won’t repeat.

The discovery of quasiperiodic structures in some metal alloys by materials scientist Dan Schechtman earned a 2011 Nobel Prize in Chemistry and opened up the study of quasicrystals.

Since 2012, Guevara and Bart Raeymaekers, associate professor of mechanical engineering, have been collaborating on designing materials with custom-designed structures at the microscale. They weren’t initially looking to create quasiperiodic materials—in fact, their first theoretical experiments, led by mathematics doctoral student China Mauck, were focused on periodic materials and what patterns of particles might be possible to achieve by using ultrasound waves. In each dimensional plane, they found that two pairs of parallel ultrasound transducers suffice to arrange particles in a periodic structure.

But what would happen if they had one more pair of transducers? To find out, Raeymaekers and graduate student Milo Prisbrey (now at Los Alamos National Laboratory) provided the experimental instruments, and mathematics professor Elena Cherkaev provided experience with the mathematical theory of quasicrystals. Guevara and Mauck conducted theoretical calculations to predict the patterns that the ultrasound transducers would create.

Creating the quasiperiodic patterns

Cherkaev says that quasiperiodic patterns can be thought of as using, instead of a cut-and-paste approach, a “cut-and-project” technique.

If you use cut-and-project to design quasiperiodic patterns on a line, you start with a square grid on a plane.  Then you draw or cut a line so that it passes through only one grid node. This can be done by drawing the line at an irrational angle, using an irrational number like pi, an infinite series of numbers that never repeats. Then you can project the nearest grid nodes on the line and can be sure that the patterns of the distances between the points on the line never repeats. They are quasiperiodic.

The approach is similar in a two-dimensional plane. “We start with a grid or a periodic function in higher-dimensional space,” Cherkaev says. “We cut a plane through this space and follow a similar procedure of restricting the periodic function to an irrational 2-D slice.” When using ultrasound transducers, as in this study, the transducers generate periodic signals in that higher-dimensional space.

The researchers set up four pairs of ultrasound transducers in an octagonal stop sign arrangement. “We knew that this would be the simplest setup where we could demonstrate quasiperiodic particle arrangements,” Guevara says. “We also had limited control on what signals to use to drive the ultrasound transducers; we could essentially use only the signal or its negative.”

Into this octagonal setup, the team placed small carbon nanoparticles, suspended in water. Once the transducers turned on, the ultrasound waves guided the carbon particles into place, creating a quasiperiodic pattern similar to a Penrose tiling.

“Once the experiments were performed, we compared the results to the theoretical predictions and we got a very good agreement,” Guevara says.

Custom materials

The next step would be to actually fabricate a material with a quasiperiodic pattern arrangement. This wouldn’t be difficult, Guevara says, if the particles were suspended in a polymer instead of water that could be cured or hardened once the particles were in position.

“Crucially, with this method, we can create quasiperiodic materials that are either 2-D or 3-D and that can have essentially any of the common quasiperiodic symmetries by choosing how we arrange the ultrasound transducers and how we drive them,” Guevara says.

It’s yet to be seen what those materials might be able to do, but one eventual application might be to create materials that can manipulate electromagnetic waves like those that 5G cellular technology uses today. Other already-known applications of quasiperiodic materials include nonstick coatings, due to their low friction coefficient, and coatings insulating against heat transfer, Cherkaev says.

Yet another example is the hardening of stainless steel by embedding small quasicrystalline particles. The press release for the 2011 Nobel Prize in Chemistry mentions that quasicrystals can “reinforce the material like armor.”

So, the researchers say, we can hope for many new exciting applications of these novel quasiperiodic structures created by ultrasound particle assembly.

Find the full study here.

 

by Paul Gabrielsen, first published in @theU

Allergy Season

Climate Change & Allergies


William Anderegg

With spring around the corner, here's some bad news for allergy sufferers: Human-caused climate change has both worsened and lengthened pollen seasons across the U.S. and Canada, a study Monday reports.

The new research shows that pollen seasons start 20 days earlier, are 10 days longer and feature 21% more pollen than they did in 1990.

“The strong link between warmer weather and pollen seasons provides a crystal-clear example of how climate change is already affecting people's health across the U.S.,” said study lead author William Anderegg, a biologist at the University of Utah.

"Climate change is making pollen seasons worse across the U.S., and that has major implications for asthma, allergies and other respiratory health problems," he told USA TODAY.

Climate change, aka global warming, is caused by the burning of fossil fuels such as oil, gas and coal, which release greenhouse gases such as carbon dioxide and methane into the atmosphere.

Allergies to airborne pollen can be more than just a seasonal nuisance to many. Allergies are tied to respiratory health and have implications for viral infections, emergency room visits and even children’s school performance, according to a statement from the University of Utah. More pollen, hanging around for a longer season, makes those impacts worse.

Climate change has two broad effects, according to the study. First, it shifts pollen seasons earlier and lengthens their duration. Second, it increases the pollen concentrations in the air so pollen seasons are, on average, worse.

Anderegg's research team looked at measurements from 1990 to 2018 from 60 pollen count stations across the U.S. and Canada, maintained by the National Allergy Bureau.

Although nationwide pollen amounts increased by around 21% over the study period, the greatest increases were recorded in Texas and the Midwest, and more among tree pollen than among other plants.

"Our findings are consistent with a broad body of research on pollen seasons, respiratory health and climate change," Anderegg said. "Other studies have also found increasing pollen loads in many regions and, in controlled greenhouse settings, that warmer temperatures and higher carbon-dioxide concentrations increase plant pollen production."

The researchers also found that the contribution of climate change to increasing pollen amounts is accelerating.

“Climate change isn’t something far away and in the future," Anderegg concluded. "It’s already here in every spring breath we take and increasing human misery. The biggest question is – are we up to the challenge of tackling it?”

The study was published in the Proceedings of the National Academy of Sciences, a peer-reviewed journal.

 

First published @ usatoday

Sloan Research Fellow

LUISA WHITTAKER-BROOKS AWARDED PRESTIGIOUS SLOAN AWARD


Assistant Professor of Chemistry Luisa Whittaker-Brooks is one of the recipients of the prestigious 2021 Sloan Research Fellowship, given to researchers “whose creativity, innovation, and research accomplishments make them stand out as the next generation of scientific leaders.”

The awards are open to scholars in eight scientific and technical fields: chemistry, computational and evolutionary molecular biology, computer science, Earth system science, economics, mathematics, neuroscience and physics. Candidates must be nominated by their fellow scientists, and winners are selected by independent panels of senior scholars on the basis of a candidate’s research accomplishments, creativity and potential to become a leader in his or her field. More than 1000 researchers are nominated each year for 128 fellowship slots. Winners receive a two-year, $75,000 fellowship which can be spent to advance the fellow’s research.

Whittaker-Brooks, a 2007 Fulbright fellow, earned her doctorate from the State University of New York at Buffalo before a L’Oreal USA for Women in Science Postdoctoral fellowship at Princeton University. Among other awards, Whittaker-Brooks has received a Department of Energy Early Career Award, a Cottrell Research Scholarship, a Marion Milligan Mason Award for Women in the Chemical Sciences and was named one of C&EN’s Talented 12 in 2018.

“I was very excited as this award is a testament to all the great work that my students have accomplished throughout these years,” Whittaker-Brooks said. “I am happy to see that their endless creativity and research work ethics are highly recognized in the field.”

Her research studies the properties and fabrication processes of nanomaterials for potential applications in solar energy conversion, thermoelectrics, batteries and electronics. She and her research group are also testing hybrid concepts to simultaneously integrate multiple functions, such as a nanosystem that scavenges its own energy.

The Fellowship is funded by the Alfred P. Sloan Foundation, a not-for-profit dedicated to improving the welfare of all through the advancement of scientific knowledge. Founded in 1934 by industrialist Alfred P. Sloan Jr., the foundation disburses about $80 million in grants each year in four areas: for research in science, technology, engineering, mathematics and economics; initiatives to increase the quality and diversity of scientific institutions and the science workforce; projects to develop or leverage technology to empower research and efforts to enhance and deepen public engagement with science and scientists.

Since the first fellowships were awarded in 1955, 44 faculty from University of Utah have received a Sloan Research Fellowship.

 

first published @ chem.utah.edu

Sea Ice Science

The Science of Sea Ice


A sheet of floating Arctic or Antarctic ice probably isn’t the setting in which you’d expect to find a mathematician. But that’s exactly where distinguished professor Ken Golden trains students and carries out experiments, as explained in a video introduction to Golden’s Frontiers of Science lecture, hosted by the College of Science and held on Feb. 18.

“It’s one thing to sort of sit in your office and develop theorems and theories and models about as complex a system as sea ice,” Golden says. “It exhibits all kinds of fascinating phenomena and behavior that you wouldn’t necessarily expect or think is important until you actually get down there and see it in action.”

Watch the full video introduction, produced by University Marketing & Communications, below or find the video here. Golden talks about his experiences in the Arctic and Antarctica and about what he and his students have learned from bringing the principles of mathematics into some of Earth’s most remote and most vulnerable environments.

Golden studies how sea ice forms and melts using mathematical models. He’s logged 18 trips to the Arctic and Antarctic, and is a Fellow of the Explorers Club. He is also a Fellow of the Society for Industrial and Applied Mathematics, and an Inaugural Fellow of the American Mathematical Society.

The Frontiers of Science lecture series was established in 1967 by University of Utah alumnus and Physics Professor Peter Gibbs. Today, Frontiers of Science is the longest continuously running lecture series at the University of Utah. The 2020-2021 Frontiers of Science lectures, featuring University of Utah faculty, are online only.

In Golden’s lecture, he discusses his research, his Arctic and Antarctic adventures and how mathematics is currently playing an important role in addressing these fundamental issues and will likely play an even greater role in the future. Watch the full video of the presentation below, or find the video here.

Ken Golden’s Recent Research

 

by Paul Gabrielsen - first published in @THEU

 

COVID-19 Vaccine Panel

Understanding the Science


U of U panel of experts will answer COVID-19 vaccine questions at free event.

Depending who you ask, the COVID-19 vaccine could be the miraculous answer to worldwide prayers. Others may think it's an ill-tested, reckless way to control increasingly desperate people. Suffice to say, there's no shortage of opinions on whether the vaccine is safe, effective or even ethical—all while the list of myths surrounding it continues to grow.

Fortunately, University of Utah's College of Science is clearing up much of the confusion surrounding the COVID-19 vaccines in its quarterly virtual lecture series, "Understanding the Science". This quarter's installment, currently scheduled for Feb. 17, tackles one of the hottest topics not only in the community but in the entire world: COVID-19 vaccines.

Moderated by Tom Thatcher of Intuitive Funding, which is sponsoring the event, this free, virtual panel includes experts from both the University of Utah campus and across the state, including Dr. Fred Adler of the university's Department of Mathematics, Jennifer Dailey-Provost, Utah State Representative, and Dr. Ryan Looper of the University of Utah's Department of Chemistry.

Together, panelists will address the science behind the COVID-19 vaccine, information on community spread, policy insight on vaccine rollout schedules and how the vaccine will impact the economy and the future—right here in Utah and around the world.

Additionally, attendees will have the opportunity to pose questions regarding the vaccine when they register for the event, which may be discussed during the webinar. So, whether you're worried about any of the myths circulating around the vaccine—like the claim that it impacts fertility or that its speedy development undermines its safety and effectiveness—you can pose these topics for discussion by the panel.

Discussing the COVID-19 vaccine is a natural topic for the Understanding the Science lecture series, which brings scientific experts, government leaders and community advocates together to discuss major issues facing Utahans today. And since the Utah Health Department reports more than 337,000 Utahans have contracted COVID-19 so far—with more than 1,600 dying from the disease and an entire state living under regulations to slow the spread—this is one issue affecting every Utah resident.

"Understanding the Science: COVID-19 Vaccine" will be held virtually Wednesday, Feb. 17 from 7-9 p.m. If you plan to attend, please register. While the College of Science's Lecture Series has historically been an in-person event, COVID-19's social distancing practices have necessitated the shift to virtual webinars.

That said, with a vaccine now available to at-risk populations and wider availability on the horizon, the University of Utah College of Science hopes to return to in-person events later in 2021.

COVID-19 has dramatically shifted Utahan's way of life. With vaccines becoming available for more and more Utahans, it's important to understand its risks, the myths surrounding them and the possible impact on the future. Find out more about the free webinar, register and submit your questions for discussion at the University of Utah.

>> REGISTER <<


Originally published @ KSL.com

Priyam Patel

Priyam Patel


Visualizing the Topology of Surfaces

Imagine a surface that looks like a hollow doughnut. The “skin” of the doughnut has no thickness and is made of stretchy, flexible material. “Some of my favorite mathematical problems deal with objects like this–surfaces and curves or loops on such surfaces,” said Priyam Patel, assistant professor of mathematics, who joined the Math Department in 2019. “I like how artistic and creative my work feels, and it’s also very tangible since I can draw pictures representing different parts of a problem I’m working on.”

Patel works in geometry and topology. The two areas differ in that geometry focuses on rigid objects where there is a notion of distance, while topological objects are much more fluid. Patel likes studying a geometrical or topological object extensively so that she’s able to get to know the space, how it behaves, and what sort of phenomena it exhibits. In her research, Patel’s goals are to study and understand curves on surfaces, symmetries of surfaces, and objects called hyperbolic manifolds and their finite covering spaces. Topology and geometry are used in a variety of fields, including data analysis, neuroscience, and facial recognition technology. Patel’s research doesn’t focus on these applications directly since she works in pure mathematics.

Challenges as a Minority

Patel became fascinated with mathematics in high school while learning to do proofs. She was fortunate to have excellent high school math teachers, who encouraged her to consider majoring in math in college. “When I was an undergraduate at New York University (NYU), I had a female professor for multivariable calculus who spent a lot of time with me in office hours and gave me challenging problems to work on,” said Patel. “She was very encouraging and had a huge impact on me.”

As a woman of color, Patel often felt out of place in many of her classes at NYU. Later, she was one of a handful of women accepted into a Ph.D. program at Rutgers University. Unfortunately, these experiences led to strong feelings of “impostor syndrome” for her as a graduate student. Eventually, she overcame them and learned to celebrate her successes, focusing on the joy that mathematics brings to her life. She has also worked to find a community of mathematicians to help support her through the tough times. “I’ve received a lot of encouragement from friends and mentors both in and outside of my math community,” she said. “I feel especially fortunate to have connected with strong women mentors in recent years.”

Mentors and Outside Interests

Feng Luo, professor of mathematics at Rutgers, was Patel’s Ph.D. advisor, and he played an active role in the early years of her math career. “Talking about math with Dr. Luo is always a positive experience, and his encouragement has been pivotal to my success as a mathematician,” said Patel. Another mentor is Alan Reid, chair and professor of the Department of Mathematics at Rice University. Patel notes that there are many aspects to being a mathematician outside of math itself, and these mentors have helped her navigate her career and offered support, encouragement, and advice.

Patel loves mathematics but makes time for other things in life. She enjoys rock climbing, yoga, dancing, and painting. Music is also a huge part of her life, and she sings and plays the guitar.

Future Research

Patel is currently working on problems concerning groups of symmetries of certain surfaces. Specifically, she has been studying the mapping class groups of infinite-type surfaces, which is a new and quickly growing field of topology. “It’s quite exciting to be at the forefront of it. I would like to tackle some of the biggest open problems in this area in the next few years, such as producing a Nielsen-Thurston type classification for infinite-type surfaces,” she said. She is also interested in the work of Ian Agol, professor of mathematics at Berkeley, who won a Breakthrough Prize in 2012 for solving an open problem in low-dimensional topology. Patel would like to build on Agol’s work in proving a quantitative version of his results. Other areas she’d like to explore are the combinatorics of 3-manifolds and the theory of translation surfaces.

 

by Michele Swaner

 

Lake of Dust

Lake of Dust


Is Utah’s great lake turning to dust?

The flat dry lakebed (also called a playa) surrounding Utah’s Great Salt Lake is more than 750 square miles—an area bigger than Houston. The wide-open landscape is surprisingly varied and is the realm of coyotes, bison, and a few hardy plants. It’s probably safe to say that no one knows the Great Salt Lake playa better than University of Utah atmospheric scientist Kevin Perry.

From June 2016 to August 2018, Perry traversed the playa by bike, researching how it contributes to dust in the Salt Lake Valley’s air. In a report prepared for the Utah Department of Natural Resources and Utah Division of Facilities Construction and Management, Perry details the current dust source regions on the playa and explains how declining lake levels, as well as damage to the playa, could make the problem worse.

“A lot of the lake is being protected by a relatively fragile crust,” Perry says. “Only 9% of the lake right now is blowing dust. If the crust were to erode or be destroyed, then a maximum of 22% of the lake would actually have enough silt and clay particles to become dust sources. We know where those sources are. We know what needs to be protected.”

photo: Kevin Perry

A solitary journey
Perry has decades of experience studying how dust is transported through the air. He first delved into the topic as a postdoctoral researcher at the University of California at Davis where he used National Park Service measurements of particle composition to prove that high concentrations of mineral dust in the air over the eastern United States during summer originated from Africa. Later, he used these same techniques to track Asian dust originating in the Gobi and Taklamakan deserts as it traversed the Pacific Ocean. “As I’ve lived here in Utah longer,” he says, “I eventually became more interested in the local dust sources.” As the Great Salt Lake water level has declined from its historic high in the 1980s, more and more of the playa is exposed to wind, and dust storms in the Salt Lake Valley have become more frequent. Perry secured funding to study the playa, determine where the dust was coming from and analyze the sources to see if elements present in the dust might pose a health hazard to Wasatch Front residents.

Perry decided he would traverse the playa on a preset grid system, to make sure he wasn’t biased in selecting sampling locations, and to ensure he captured the different kinds of terrain present on the lakebed. He also decided that he would do the survey by himself and do it on a bicycle.

Biking had practical advantages—it was far less costly than operating an ATV, and was much less likely to damage the playa surface. Also, bicycles don’t get stuck in the mud as much as ATVs—Perry says it took him all of 20 minutes to free the bike in his worst incidence of getting stuck.

But Perry also had personal reasons for choosing a bicycle. “I turned 50 during the experiment,” he says, and biking allowed him to revisit his preferred mode of transit for many years when he was younger. “I felt like this was probably my last chance to go do something to really push myself physically,” he says.

photo: Kevin Perry

Surprising variation
So, on days that he wasn’t teaching, including weekends and summers, Perry set off on his bike, trailer in tow, to survey the playa. His colleagues were a bit skeptical. “They thought I was crazy,” Perry says. “They said, ‘Why would you spend two years of your life doing this?’”

But once he got past the edges of the playa, everything, including the bugs, went quiet and he found a terrain full of surprising variation. “You could look 15 yards off to the right and it would look very different than where you’re standing,” he says.

He used a classification system to describe each location. Was there vegetation? How thick was the surface crust and how erodible was it? Were there any other features, such as mineral crystals, sand dunes or, cryptically, rocks with long trails in the playa suggesting they had moved over time? He also took samples to take back to the lab and analyze for percentages of silt and clay.

Perry saw wildlife too: porcupines, pelicans, coyotes, bison—even the tracks of a cougar. “They come out onto the lake bed looking for things,” he says, “I don’t know what they’re looking for, but I was just amazed by the variety in the wildlife that I saw.”

Dust sources
Only about a quarter of the lakebed could potentially generate dust, Perry found. That’s because most of it is covered with a crust that prevents the wind from lofting the dust and carrying it into the Salt Lake Valley. Vegetation, when it is present, can also help to anchor the dust.

How did Perry determine if a location was generating dust? Active dust sources were identified as areas with little or no vegetation, no crust or an erodible shallow crust, and high silt and clay fractions. The “boot test” —kicking the ground several times to see if the surface was susceptible to wind erosion—was a great way to identify these spots in the field. Four dust-generating hotspots were identified: the extreme northwest corner of the playa, the northern Bear River Bay area, Farmington Bay east of Antelope Island and Carrington Bay, on the west shore.

“We now know the elevation of all of those dust sources,” Perry says. “In Farmington Bay, if the lake level were increased to 4,200 feet, it would cover up 75% of the dust hotspots.” Conversely, further reductions in lake levels will likely expose more dust-generating regions. And the destruction of the crust—by ATV activity, for example, would further expand the dust sources.

Perry also analyzed the soil samples for elemental composition to see if dust from the playa might possibly be carrying toxic heavy metals. For most elements, the soil contained too little to be of any health concern. Perry did find elevated levels of arsenic in the soil, but it’s not clear yet how frequently Salt Lake Valley residents are exposed to the dust.

Becoming an advocate
The expansive data set Perry brought off the playa has other applications as well. Researchers studying the effects of dust on snowpack in Utah’s mountains can use the chemical signatures in soil samples to determine where the dust comes from. Ecologists can assess the effects of both nutrients and toxic elements in the dust on near and distant ecosystems. And dust can now become part of the conversation about conserving and protecting the Great Salt Lake.

“I started off as a scientist and I’m starting to feel more like an advocate for the preservation of the lake,” Perry says. “Most people think that any water that goes into the lake is wasted water because it turns salty and we can’t drink it or use it through irrigation. So, there’s this mindset locally that we should use all the water before it gets to the lake because once it gets to the lake, it’s useless.” But each drop, he says, adds to the unique interconnected environment supported by the waters of the Great Salt Lake.

“I’ll look back on this project with fondness,” Perry says. “While you’re actually doing it, it’s hot, it’s unpleasant, it’s a lot of physical work. But just knowing that there’s this resource out there that we need to protect—I’m glad I’ve done it.”

Find the full report, “Results of the Great Salt Lake Dust Plume Study,” here.

 

by Paul Gabrielsen, first published in @theU.

Giant Poisonous Rats

The secret social lives of giant poisonous rats.

The African crested rat (Lophiomys imhausi) is hardly the continent’s most fearsome-looking creature—the rabbit-sized rodent resembles a gray puffball crossed with a skunk—yet its fur is packed with a poison so lethal it can fell an elephant and just a few milligrams can kill a human. In a Journal of Mammology paper published today, Smithsonian Conservation Biology Institute, University of Utah and National Museums of Kenya researchers found the African crested rat is the only mammal known to sequester plant toxins for chemical defense and uncovered an unexpected social life—the rats appear to be monogamous and may even form small family units with their offspring.

Sara B. Weinstein and Katrina Nyawira.

“It’s considered a ‘black box’ of a rodent,” said Sara Weinstein, lead author and Smithsonian-Mpala postdoctoral fellow  and postdoctoral researcher at the University of Utah. “We initially wanted to confirm the toxin sequestration behavior was real and along the way discovered something completely unknown about social behavior. Our findings have conservation implications for this mysterious and elusive rat.”

People in East Africa have long suspected the rat to be poisonous. A 2011 paper proposed these large rodents sequester toxins from the poison arrow tree (Acokanthera schimperi). A source of traditional arrow poisons, Acokanthera contains cardenolides, compounds similar to those found in monarch butterflies, cane toads and some human heart medications. Cardenolides, particularly the ones in Acokanthera, are highly toxic to most animals.

“The initial 2011 study observed this behavior in only a single individual. A main goal of our study was to determine how common this exceptional behavior was,” said co-author Denise Dearing from the University of Utah.

When threatened, the African crested rat lives up to its name and erects a crest of hair on its back to reveal a warning on its flanks—black and white stripes running from neck-to-tail on each side of its body. The 2011 study hypothesized that the rats chew the Acokanthera bark and lick the plant toxins into specialized hairs at the center of these stripes.

In the new study, researchers trapped 25 African crested rats, the largest sample size of the species ever trapped. Using motion-activated cameras, they documented nearly 1,000 hours of rat behavior. For the first time, they recorded multiple rats sequestering Acokanthera toxins and discovered many traits that suggest they are social, and likely monogamous.

“Everyone thought it was a solitary animal. I’ve been researching this rat for more than ten years, so you would expect there to be fewer surprises,” said Bernard Agwanda, curator of Mammals at the Museums of Kenya, co-author of this study and the 2011 paper. “This can carry over into conservation policy.”

A rich social life

As a postdoctoral fellow at the Mpala Research Centre, Weinstein first searched for the rats with camera traps, but found that they rarely triggered the cameras. Weinstein was then joined by Katrina Nyawira, the paper’s second author and now a graduate student at Oxford Brookes University. Together, they spent months experimenting with live traps to capture the elusive rodents.

“We talked to rangers and ranchers to ask whether they’d seen anything.” said Nyawira. Eventually they figured out that loading the traps with smelly foods like fish, peanut butter and vanilla, did the trick. “Out of 30 traps, we finally got two animals. That was a win. This thing is really rare.”

Those two animals changed the course of the study. They first caught an individual female, then caught a male at the same site two days later.

The African crested rat.

“We put these two rats together in the enclosure and they started purring and grooming each other. Which was a big surprise, since everyone we talked to thought that they were solitary,” Weinstein said. “I realized that we had a chance to study their social interactions.”

Weinstein and Nyawira transformed an abandoned cow shed into a research station, constructing stalls equipped with ladders and nest boxes to simulate their habitat in tree cavities. They placed cameras in strategic spots of each pen and then analyzed every second of their footage, tracking the total activity, movement and feeding behavior. The aim was to build a baseline of normal behavior before testing whether behavior changed after the rats chewed the toxin cardenolides from the poison arrow tree.

“They’re herbivores, essentially rat-shaped little cows,” Weinstein said. “They spend a lot of time eating, but we also see them walk around, mate, groom, climb up the walls, sleep in the nest box.”

The footage and behavioral observations strongly support a monogamous lifestyle. They share many of the traits common among monogamous animals: large size, a long life span and a slow reproductive rate. Additionally, the researchers trapped a few large juveniles in the same location as adult pairs, suggesting that offspring spend an extended period of time with their parents. In the pens, the paired rats spent more than half of their time near each other, and frequently followed each other around. The researchers also recorded special squeaks, purrs and other communicative noises making up a wide vocal repertoire. Further behavioral studies and field observation would uncover more insights into their reproductive and family life.

After the researchers established a baseline of behavior, they offered rats branches from the poison arrow tree. Although rats did not sequester every time the plant was offered, 10 rats did at least once. They chewed it, mixed it with spit, and licked and chewed it into their specialized hairs. Exposure to the Acokanthera toxins did not alter rat behavior, and neither did eating milkweed, the same cardenolide-enriched plant used as chemical defense by monarch butterflies. Combined, these observations suggest that crested rats are uniquely resistant to these toxins.

“Most people think that it was a myth because of the potency of the tree,” said Nyawira. “But we caught it on video! It was very crazy.”

The rats were selective about using Acokanthera cardenolides, suggesting that rats may be picky about their toxin source, or that anointed toxins remain potent on the fur a long time, just like traditional arrow poisons from the same source.

African crested rat conservation

The African crested rat is listed as IUCN species of least concern, but there’s little actual data on the animals. Agwanda has studied African crested rats for more than a decade—and sees indications that they’re in trouble.

“We don’t have accurate numbers, but we have inferences. There was a time in Nairobi when cars would hit them and there was roadkill everywhere,” said Agwanda, who continues to monitor the populations. “Now encountering them is difficult. Our trapping rate is low. Their population is declining.”

The research team is planning future studies to better understand their physiology and behavior. “We are particularly interested in exploring the genetic mechanisms that allow the crested rats and their parasites to withstand the toxic cardenolides” said co-author Jesús Maldonado of the Smithsonian Conservation Biology Institute and Weinstein’s Smithsonian-Mpala Postdoctoral fellowship co-advisor.

“We are looking at a broad range of questions influenced by habitat change. Humans have cleared forests to make farms and roads. We need to understand how that impacts their survival,” Agwanda said. Additionally, Agwanda is building an exhibit at the Museums of Kenya to raise awareness about this unique poisonous animal.

About the Smithsonian’s National Zoo and Conservation Biology Institute

The Smithsonian’s National Zoo and Conservation Biology Institute leads the Smithsonian’s global effort to save species, better understand ecosystems and train future generations of conservationists. As Washington, D.C.’s favorite destination for families, the Zoo connects visitors to amazing animals and the people working to save them. In Front Royal, Virginia, across the United States and in more than 30 countries worldwide, Smithsonian Conservation Biology Institute scientists and animal care experts tackle some of today’s most complex conservation challenges by applying and sharing what they learn about animal behavior and reproduction, ecology, genetics, migration and conservation sustainability to save wildlife and habitats. Follow the Zoo on Facebook, Twitter and Instagram.

About the National Museums of Kenya

National Museums of Kenya (NMK) is a state corporation established by an Act of Parliament, the Museums and Heritage Act 2006. NMK is a multi-disciplinary institution whose role is to collect, preserve, study, document and present Kenya’s past and present cultural and natural heritage. This is for the purposes of enhancing knowledge, appreciation, respect and sustainable utilization of these resources for the benefit of Kenya and the world, for now and posterity. NMK’s mutual concern for the welfare of mankind and the conservation of the biological diversity of the East African region and that of the entire planet demands success in such efforts. In addition, NMK manages many Regional Museums, Sites and Monuments of national and international importance alongside priceless collections of Kenya’s living cultural and natural heritage. As an institution that must respond to the growing needs of the society, NMK is striving to contribute in a unique way to the task of national development.

Media Contacts

Sara Weinsteinpostdoctoral researcher at the University of Utah; postdoctoral fellow at the Smithsonian-Mpala

Denise Dearingdistinguished professor and director, School of Biological Sciences

Lisa Potterresearch/science communications specialist, University of Utah Communications
Office: 801-585-3093 Mobile: 949-533-7899 

Adapted from a release by the Carnegie Observatories. Also published in @theU

Next-Gen Astronomy

 

Gail Zasowski

Next-gen astronomical survey makes its first observations.

The Sloan Digital Sky Survey’s fifth generation collected its very first observations of the cosmos at 1:47 a.m. on October 24, 2020. As the world’s first all-sky time-domain spectroscopic survey, SDSS-V will provide groundbreaking insight into the formation and evolution of galaxies—like our own Milky Way—and of the supermassive black holes that lurk at their centers.

Funded primarily by member institutions, along with grants from the Alfred P. Sloan Foundation, the U.S. National Science Foundation, and the Heising-Simons Foundation, SDSS-V will focus on three primary areas of investigation, each exploring different aspects of the cosmos using different spectroscopic tools. Together these three project pillars—called “Mappers”—will observe more than six million objects in the sky, and monitor changes in more than a million of those objects over time.

The survey’s Local Volume Mapper will enhance our understanding of galaxy formation and evolution by probing the interactions between the stars that make up galaxies and the interstellar gas and dust that is dispersed between them. The Milky Way Mapper will reveal the physics of stars in our Milky Way, the diverse architectures of its star and planetary systems, and the chemical enrichment of our galaxy since the early universe. The Black Hole Mapper will measure masses and growth over cosmic time of the supermassive black holes that reside in the hearts of galaxies, and of the smaller black holes left behind when stars die.

“We are thrilled to start taking the first data for two of our three Mappers,” added SDSS-V spokesperson Gail Zasowski, an assistant professor in the University of Utah’s Department of Physics & Astronomy. “These early observations are already important for a wide range of science goals. Even these first targets provide data for studies ranging from mapping the inner regions of supermassive black holes and searching for exotic multiple-black hole systems, to studying nearby stars and their dead cores, to tracing the chemistry of potential planet-hosting stars across the Milky Way.”

A sampling of data from the first SDSS-V observations. Center: The telescope’s field-of-view, with the full Moon shown for scale. SDSS-V simultaneously observes 500 targets at a time within a circle of this size. Left: the optical-light spectrum of a quasar, a supermassive black hole at the center of a distant galaxy, which is surrounded by a disk of hot, glowing gas. The purple blob is an SDSS image of the light from this disk, the width of a human hair as seen from about 21 meters (63 feet) away. Right: The image and spectrum of a white dwarf –the left-behind core of a low-mass star (like the Sun) after the end of its life.

The newly-launched SDSS-V will continue the path-breaking tradition set by the survey’s previous generations, with a focus on the ever-changing night sky and the physical processes that drive these changes, from flickers and flares of supermassive black holes to the back-and-forth shifts of stars being orbited by distant worlds. SDSS-V will provide the spectroscopic backbone needed to achieve the full science potential of satellites like NASA’s TESS, ESA’s Gaia, and the latest all-sky X-ray mission, eROSITA.

As an international consortium, SDSS has always relied heavily on phone and digital communication. But adapting to exclusively virtual communication tactics since the beginning of the COVID-19 pandemic was a challenge, along with tracking global supply chains and laboratory availability at various university partners as they shifted in and out of lockdown during the final ramp-up to the survey’s start. Particularly inspiring were the project’s expert observing staff, who worked in even-greater-than-usual isolation to shut down, and then reopen, the survey’s mountain-top observatories.

“In a year when humanity has been challenged across the globe, I am so proud of the worldwide SDSS team for demonstrating—every day—the very best of human creativity, ingenuity, improvisation, and resilience.” said SDSS-V director Juna Kollmeier, of the Carnegie Observatories. “It has been a challenging period for SDSS and the world, but I’m happy to report that the pandemic may have slowed us, but it has not stopped us.”

Anil Seth


The University of Utah will actually operate as the data reduction center for SDSS-V, supported by the U’s Center for High Performance Computing. Joel Brownstein, a research associate professor in the Department of Physics & Astronomy, is the head of data management and archiving for SDSS-V. “As we see the first observations streaming to Utah from the mountain observatories, we are just starting to grasp the amazing potential of this ambitious data set. We are fully and proudly committed to making our results more accessible to the larger community by introducing new tools that enable a dynamic, user-driven experience.”

SDSS-V will operate out of both Apache Point Observatory in New Mexico, home of the survey’s original 2.5-meter telescope, and Carnegie’s Las Campanas Observatory in Chile, where it uses the 2.5-meter du Pont telescope.

SDSS-V’s first observations were taken in New Mexico with existing SDSS instruments, in a necessary change of plans due to the pandemic. As laboratories and workshops around the world navigate safe reopening, SDSS-V’s own suite of new innovative hardware is on the horizon—in particular, systems of automated robots to aim the fiber optic cables used to collect the light from the night sky. These robots will be installed at both observatories over the next year. New spectrographs and telescopes are also being constructed to enable the Local Volume Mapper observations.

Dr. Anil Seth, the University of Utah’s representative on the Advisory Council that oversees SDSS’s operations, highlighted the impact of the project’s open data policies and worldwide collaboration. “SDSS’s 20-year legacy has touched nearly every astronomer in the world by this point. It has become the go-to reference for astronomy textbooks on galaxies, made the most precise measurements of how our Universe is expanding, and showed us how powerful shared data can be. I look forward to see what new results SDSS V will reveal!”

For more information, please see the SDSS-V’s website at www.sdss5.org.

Adapted from a release by the Carnegie Observatories. Also published in @theU

11 Billion Years

 

 


Professor Kyle Dawson

11 billion years of history in one map: Astrophysicists reveal largest 3D model of the universe ever created.

(CNN) A global consortium of astrophysicists have created the world's largest three-dimensional map of the universe, a project 20 years in the making that researchers say helps better explain the history of the cosmos.

The Sloan Digital Sky Survey (SDSS), a project involving hundreds of scientists at dozens of institutions worldwide, collected decades of data and mapped the universe with telescopes. With these measurements, spanning more than 2 million galaxies and quasars formed over 11 billion years, scientists can now better understand how the universe developed.

Image courtesy of SDSS

"We know both the ancient history of the Universe and its recent expansion history fairly well, but there's a troublesome gap in the middle 11 billion years," cosmologist Kyle Dawson of the University of Utah, who led the team that announced the SDSS findings on Sunday. "For five years, we have worked to fill in that gap, and we are using that information to provide some of the most substantial advances in cosmology in the last decade," Dawson said in a statement.

Here's how it works: the map revealed the early materials that "define the structure in the Universe, starting from the time when the Universe was only about 300,000 years old." Researchers used the map to measure patterns and signals from different galaxies, and figure out how fast the universe was expanding at different points of history. Looking back in space allows for a look back in time.

"These studies allow us to connect all these measurements into a complete story of the expansion of the Universe," said Will Percival of the University of Waterloo in the statement.

The team also identified "a mysterious invisible component of the Universe called 'dark energy,'" which caused the universe's expansion to start accelerating about six billion years ago. Since then, the universe has only continued to expand "faster and faster," the statement said.

Image courtesy of SDSS

There are still many unanswered questions about dark energy -- it's "extremely difficult to reconcile with our current understanding of particle physics" -- but this puzzle will be left to future projects and researchers, said the statement.

Their findings also "revealed cracks in this picture of the Universe," the statement said. There were discrepancies between researchers' measurements and collected data, and their tools are so precise that it's unlikely to be error or chance. Instead, there might be new and exciting explanations behind the strange numbers, like the possibility that "a previously-unknown form of matter or energy from the early Universe might have left a trace on our history."

The SDSS is "nowhere near done with its mission to map the Universe," it said in the statement. "The SDSS team is busy building the hardware to start this new phase (of mapping stars and black holes) and is looking forward to the new discoveries of the next 20 years."

 

Adapted from a release by Jordan Raddick, SDSS public information officer
Also published in @theU, Spectrum Magazine, CNN, Forbes, and more.